HL_8G2D_215
3D structure
- PDB id
- 8G2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 8G2D|1|2w|A|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G2D_215 not in the Motif Atlas
- Homologous match to HL_1B23_002
- Geometric discrepancy: 0.2319
- The information below is about HL_1B23_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8G2D|1|2w|G|30
8G2D|1|2w|A|31
8G2D|1|2w|PSU|32
8G2D|1|2w|U|33
8G2D|1|2w|G|34
8G2D|1|2w|A|35
8G2D|1|2w|A|36
8G2D|1|2w|MIA|37
8G2D|1|2w|A|38
8G2D|1|2w|PSU|39
8G2D|1|2w|C|40
Current chains
- Chain 2w
- A-site and E-site Deacylated tRNAphe
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2l
- 30S ribosomal protein S12
- Chain 2m
- 30S ribosomal protein S13
- Chain 2v
- MF-mRNA
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