HL_8G34_006

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUUUCGACA

Length

10 nucleotides

Bulged bases

8G34|1|B|U|138, 8G34|1|B|U|139, 8G34|1|B|C|140

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G34_006 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2611

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8G34|1|B|U|135
8G34|1|B|G|136
8G34|1|B|U|137
8G34|1|B|U|138
8G34|1|B|U|139
8G34|1|B|C|140
8G34|1|B|G|141
8G34|1|B|A|142
8G34|1|B|C|143
8G34|1|B|A|144

Current chains

Chain B

23S

Nearby chains

Chain T

50S ribosomal protein L23