HL_8G38_011

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8G38|1|B|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G38_011 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.0781

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8G38|1|B|C|305
8G38|1|B|U|306
8G38|1|B|G|307
8G38|1|B|G|308
8G38|1|B|A|309
8G38|1|B|A|310
8G38|1|B|A|311
8G38|1|B|G|312

Current chains

Chain B

23S

Nearby chains

Chain U

50S ribosomal protein L24