HL_8G38_025

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

8G38|1|B|A|781, 8G38|1|B|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G38_025 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3889

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8G38|1|B|U|779
8G38|1|B|G|780
8G38|1|B|A|781
8G38|1|B|A|782
8G38|1|B|A|783
8G38|1|B|G|784
8G38|1|B|G|785

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2