HL_8G38_038

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

8G38|1|B|A|1453, 8G38|1|B|C|1454, 8G38|1|B|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G38_038 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3366

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8G38|1|B|G|1450
8G38|1|B|C|1451
8G38|1|B|G|1452
8G38|1|B|A|1453
8G38|1|B|C|1454
8G38|1|B|G|1455
8G38|1|B|G|1456
8G38|1|B|U|1457
8G38|1|B|U|1458
8G38|1|B|G|1459
8G38|1|B|U|1460
8G38|1|B|C|1461

Current chains

Chain B

23S

Nearby chains

Chain N

50S ribosomal protein L17