HL_8G38_055

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8G38|1|B|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G38_055 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1388

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8G38|1|B|C|2248
8G38|1|B|U|2249
8G38|1|B|G|2250
8G38|1|B|G|2251
8G38|1|B|G|2252
8G38|1|B|G|2253
8G38|1|B|C|2254
8G38|1|B|G|2255
8G38|1|B|G|2256

Current chains

Chain B

23S

Nearby chains

Chain 6

GTPase HflX

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27