HL_8G38_062

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

8G38|1|B|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G38_062 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.3608

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8G38|1|B|A|2471
8G38|1|B|G|2472
8G38|1|B|U|2473
8G38|1|B|U|2474
8G38|1|B|C|2475
8G38|1|B|A|2476
8G38|1|B|U|2477
8G38|1|B|A|2478
8G38|1|B|U|2479

Current chains

Chain B

23S

Nearby chains

Chain 4

50S ribosomal protein L36

Chain 6

GTPase HflX

Chain G

50S ribosomal protein L6