HL_8G38_103

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

8G38|1|B|U|958, 8G38|1|B|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G38_103 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.2483

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G38|1|B|G|954
8G38|1|B|U|955
8G38|1|B|G|956
8G38|1|B|C|957
8G38|1|B|U|958
8G38|1|B|A|959
8G38|1|B|A|960
8G38|1|B|C|961
8G38|1|B|G|962
8G38|1|B|U|963

Current chains

Chain B

23S

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16