HL_8G4S_013

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGCUCCAGG

Length

9 nucleotides

Bulged bases

8G4S|1|2|G|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_013 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.2441

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8G4S|1|2|C|543
8G4S|1|2|G|544
8G4S|1|2|C|545
8G4S|1|2|U|546
8G4S|1|2|C|547
8G4S|1|2|C|548
8G4S|1|2|A|549
8G4S|1|2|G|550
8G4S|1|2|G|551

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

Ribosomal protein S9

Chain Y

Ribosomal protein S24