HL_8G4S_016

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGGGUGAAACAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G4S|1|2|C|650
8G4S|1|2|G|651
8G4S|1|2|G|652
8G4S|1|2|G|653
8G4S|1|2|U|654
8G4S|1|2|G|655
8G4S|1|2|A|656
8G4S|1|2|A|657
8G4S|1|2|A|658
8G4S|1|2|C|659
8G4S|1|2|A|660
8G4S|1|2|G|661

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

SSU ribosomal protein S7P (Fragment)

Chain O

Ribosomal protein S14

Chain a

40S ribosomal protein S26

Chain g

Transfer RNA; tRNA