HL_8G4S_034
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- GCGCGGGUCUCAUAAUCC
- Length
- 18 nucleotides
- Bulged bases
- 8G4S|1|g|U|32
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8G4S|1|g|G|25
8G4S|1|g|C|26
8G4S|1|g|G|27
8G4S|1|g|C|28
8G4S|1|g|G|29
8G4S|1|g|G|30
8G4S|1|g|G|31
8G4S|1|g|U|32
8G4S|1|g|C|33
8G4S|1|g|U|34
8G4S|1|g|C|35
8G4S|1|g|A|36
8G4S|1|g|U|37
8G4S|1|g|A|38
8G4S|1|g|A|39
8G4S|1|g|U|40
8G4S|1|g|C|41
8G4S|1|g|C|42
Current chains
- Chain g
- E-site tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain F
- SSU ribosomal protein S7P (Fragment)
- Chain O
- Ribosomal protein S14
- Chain c
- Ribosomal protein S28
- Chain h
- Transfer RNA; tRNA
- Chain k
- mRNA
Coloring options: