HL_8G4S_038

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

G(5MU)UCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_038 not in the Motif Atlas

Homologous match to HL_4WJ4_003

Geometric discrepancy: 0.177

The information below is about HL_4WJ4_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8G4S|1|h|G|53
8G4S|1|h|5MU|54
8G4S|1|h|U|55
8G4S|1|h|C|56
8G4S|1|h|A|57
8G4S|1|h|A|58
8G4S|1|h|A|59
8G4S|1|h|U|60
8G4S|1|h|C|61

Current chains

Chain h

P-site tRNA

Nearby chains