HL_8G5Y_011

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UUGAAG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Y_011 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3388

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8G5Y|1|L5|U|392
8G5Y|1|L5|U|393
8G5Y|1|L5|G|394
8G5Y|1|L5|A|395
8G5Y|1|L5|A|396
8G5Y|1|L5|G|397
8G5Y|1|L5|A2M|398
8G5Y|1|L5|G|399

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17