HL_8G5Y_057
3D structure
- PDB id
- 8G5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- GAGGCCCCGGGCCGCCGGUGAAAUACCCCGCGAGGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUA*C
- Length
- 81 nucleotides
- Bulged bases
- 8G5Y|1|L5|G|3973, 8G5Y|1|L5|C|3997, 8G5Y|1|L5|C|3998, 8G5Y|1|L5|C|3999, 8G5Y|1|L5|G|4000, 8G5Y|1|L5|C|4001, 8G5Y|1|L5|G|4002, 8G5Y|1|L5|A|4003, 8G5Y|1|L5|G|4004, 8G5Y|1|L5|G|4005, 8G5Y|1|L5|G|4006, 8G5Y|1|L5|G|4007, 8G5Y|1|L5|C|4008, 8G5Y|1|L5|C|4009, 8G5Y|1|L5|C|4010, 8G5Y|1|L5|G|4011, 8G5Y|1|L5|G|4012, 8G5Y|1|L5|G|4013, 8G5Y|1|L5|G|4014, 8G5Y|1|L5|C|4015, 8G5Y|1|L5|G|4016, 8G5Y|1|L5|G|4017, 8G5Y|1|L5|G|4018, 8G5Y|1|L5|G|4019, 8G5Y|1|L5|U|4020, 8G5Y|1|L5|C|4021, 8G5Y|1|L5|C|4022, 8G5Y|1|L5|G|4023, 8G5Y|1|L5|C|4024, 8G5Y|1|L5|C|4025, 8G5Y|1|L5|G|4026, 8G5Y|1|L5|G|4027, 8G5Y|1|L5|C|4028, 8G5Y|1|L5|C|4029, 8G5Y|1|L5|C|4030, 8G5Y|1|L5|U|4031, 8G5Y|1|L5|G|4032, 8G5Y|1|L5|C|4033, 8G5Y|1|L5|G|4035
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8G5Y|1|L5|G|3971
8G5Y|1|L5|A|3972
8G5Y|1|L5|G|3973
8G5Y|1|L5|G|3974
8G5Y|1|L5|C|3975
8G5Y|1|L5|C|3976
8G5Y|1|L5|C|3977
8G5Y|1|L5|C|3978
8G5Y|1|L5|G|4034
8G5Y|1|L5|G|4035
8G5Y|1|L5|G|4036
8G5Y|1|L5|C|4037
8G5Y|1|L5|C|4038
8G5Y|1|L5|G|4039
8G5Y|1|L5|C|4040
8G5Y|1|L5|C|4041
8G5Y|1|L5|G|4042
8G5Y|1|L5|G|4043
8G5Y|1|L5|U|4044
8G5Y|1|L5|G|4045
8G5Y|1|L5|A|4046
8G5Y|1|L5|A|4047
8G5Y|1|L5|A|4048
8G5Y|1|L5|U|4049
8G5Y|1|L5|A|4050
8G5Y|1|L5|C|4051
8G5Y|1|L5|C|3997
8G5Y|1|L5|C|3998
8G5Y|1|L5|C|3999
8G5Y|1|L5|G|4000
8G5Y|1|L5|C|4001
8G5Y|1|L5|G|4002
8G5Y|1|L5|A|4003
8G5Y|1|L5|G|4004
8G5Y|1|L5|G|4005
8G5Y|1|L5|G|4006
8G5Y|1|L5|G|4007
8G5Y|1|L5|C|4008
8G5Y|1|L5|C|4009
8G5Y|1|L5|C|4010
8G5Y|1|L5|G|4011
8G5Y|1|L5|G|4012
8G5Y|1|L5|G|4013
8G5Y|1|L5|G|4014
8G5Y|1|L5|C|4015
8G5Y|1|L5|G|4016
8G5Y|1|L5|G|4017
8G5Y|1|L5|G|4018
8G5Y|1|L5|G|4019
8G5Y|1|L5|U|4020
8G5Y|1|L5|C|4021
8G5Y|1|L5|C|4022
8G5Y|1|L5|G|4023
8G5Y|1|L5|C|4024
8G5Y|1|L5|C|4025
8G5Y|1|L5|G|4026
8G5Y|1|L5|G|4027
8G5Y|1|L5|C|4028
8G5Y|1|L5|C|4029
8G5Y|1|L5|C|4030
8G5Y|1|L5|U|4031
8G5Y|1|L5|G|4032
8G5Y|1|L5|C|4033
8G5Y|1|L5|G|4034
8G5Y|1|L5|G|4035
8G5Y|1|L5|G|4036
8G5Y|1|L5|C|4037
8G5Y|1|L5|C|4038
8G5Y|1|L5|G|4039
8G5Y|1|L5|C|4040
8G5Y|1|L5|C|4041
8G5Y|1|L5|G|4042
8G5Y|1|L5|G|4043
8G5Y|1|L5|U|4044
8G5Y|1|L5|G|4045
8G5Y|1|L5|A|4046
8G5Y|1|L5|A|4047
8G5Y|1|L5|A|4048
8G5Y|1|L5|U|4049
8G5Y|1|L5|A|4050
*
8G5Y|1|L5|C|4051
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain 5A
- eIF5A1
- Chain Lz
- 60S ribosomal protein L10a
- Chain SF
- 40S ribosomal protein S5
Coloring options: