HL_8G5Y_076

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8G5Y|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Y_076 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1087

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8G5Y|1|L5|G|4975
8G5Y|1|L5|U|4976
8G5Y|1|L5|A|4977
8G5Y|1|L5|G|4978
8G5Y|1|L5|A|4979
8G5Y|1|L5|C|4980
8G5Y|1|L5|G|4981
8G5Y|1|L5|A|4982
8G5Y|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17