HL_8G5Z_003
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G5Z_003 not in the Motif Atlas
- Homologous match to HL_6UFM_003
- Geometric discrepancy: 0.1798
- The information below is about HL_6UFM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8G5Z|1|At|G|53
8G5Z|1|At|U|54
8G5Z|1|At|U|55
8G5Z|1|At|C|56
8G5Z|1|At|G|57
8G5Z|1|At|A|58
8G5Z|1|At|U|59
8G5Z|1|At|U|60
8G5Z|1|At|C|61
Current chains
- Chain At
- A-site tRNA Phe
Nearby chains
- Chain EF
- Elongation factor 1-alpha 1
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LK
- 60S ribosomal protein L12
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