HL_8G5Z_030

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8G5Z|1|L5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Z_030 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.3296

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8G5Z|1|L5|C|1816
8G5Z|1|L5|U|1817
8G5Z|1|L5|G|1818
8G5Z|1|L5|G|1819
8G5Z|1|L5|C|1820
8G5Z|1|L5|G|1821
8G5Z|1|L5|U|1822
8G5Z|1|L5|G|1823

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lb

eL29