HL_8G5Z_045

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

AGUUCUCUU(PSU)U

Length

11 nucleotides

Bulged bases

8G5Z|1|L5|U|2631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Z_045 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1889

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

8G5Z|1|L5|A|2623
8G5Z|1|L5|G|2624
8G5Z|1|L5|U|2625
8G5Z|1|L5|U|2626
8G5Z|1|L5|C|2627
8G5Z|1|L5|U|2628
8G5Z|1|L5|C|2629
8G5Z|1|L5|U|2630
8G5Z|1|L5|U|2631
8G5Z|1|L5|PSU|2632
8G5Z|1|L5|U|2633

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22