HL_8G5Z_052

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGGUCGGUCGCGGCCGGCGCCUAGC

Length

25 nucleotides

Bulged bases

8G5Z|1|L5|G|2903, 8G5Z|1|L5|C|2909, 8G5Z|1|L5|G|2910, 8G5Z|1|L5|C|3584, 8G5Z|1|L5|G|3590, 8G5Z|1|L5|C|3594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G5Z|1|L5|G|2901
8G5Z|1|L5|G|2902
8G5Z|1|L5|G|2903
8G5Z|1|L5|U|2904
8G5Z|1|L5|C|2905
8G5Z|1|L5|G|2906
8G5Z|1|L5|G|2907
8G5Z|1|L5|U|2908
8G5Z|1|L5|C|2909
8G5Z|1|L5|G|2910
8G5Z|1|L5|C|3584
8G5Z|1|L5|G|3585
8G5Z|1|L5|G|3586
8G5Z|1|L5|C|3587
8G5Z|1|L5|C|3588
8G5Z|1|L5|G|3589
8G5Z|1|L5|G|3590
8G5Z|1|L5|C|3591
8G5Z|1|L5|G|3592
8G5Z|1|L5|C|3593
8G5Z|1|L5|C|3594
8G5Z|1|L5|U|3595
8G5Z|1|L5|A|3596
8G5Z|1|L5|G|3597
8G5Z|1|L5|C|3598

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SL

uS17