HL_8G5Z_056

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

G(A2M)(A2M)GAAA(PSU)UC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Z_056 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3488

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8G5Z|1|L5|G|3722
8G5Z|1|L5|A2M|3723
8G5Z|1|L5|A2M|3724
8G5Z|1|L5|G|3725
8G5Z|1|L5|A|3726
8G5Z|1|L5|A|3727
8G5Z|1|L5|A|3728
8G5Z|1|L5|PSU|3729
8G5Z|1|L5|U|3730
8G5Z|1|L5|C|3731

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lo

Ribosomal protein L36a

Chain Lz

uL1