HL_8G5Z_060

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGAGGCCCGGGCCGCCGGUGAAAUAC

Length

26 nucleotides

Bulged bases

8G5Z|1|L5|A|3972, 8G5Z|1|L5|G|4035

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G5Z|1|L5|G|3970
8G5Z|1|L5|G|3971
8G5Z|1|L5|A|3972
8G5Z|1|L5|G|3973
8G5Z|1|L5|G|3974
8G5Z|1|L5|C|3975
8G5Z|1|L5|C|3976
8G5Z|1|L5|C|3977
8G5Z|1|L5|G|4034
8G5Z|1|L5|G|4035
8G5Z|1|L5|G|4036
8G5Z|1|L5|C|4037
8G5Z|1|L5|C|4038
8G5Z|1|L5|G|4039
8G5Z|1|L5|C|4040
8G5Z|1|L5|C|4041
8G5Z|1|L5|G|4042
8G5Z|1|L5|G|4043
8G5Z|1|L5|U|4044
8G5Z|1|L5|G|4045
8G5Z|1|L5|A|4046
8G5Z|1|L5|A|4047
8G5Z|1|L5|A|4048
8G5Z|1|L5|U|4049
8G5Z|1|L5|A|4050
8G5Z|1|L5|C|4051

Current chains

Chain L5

28S rRNA

Nearby chains

Chain 5A

eIF5A1

Chain Lz

uL1

Chain SF

40S ribosomal protein S5