HL_8G5Z_074

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Z_074 not in the Motif Atlas

Geometric match to HL_3RW6_001

Geometric discrepancy: 0.0758

The information below is about HL_3RW6_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8G5Z|1|L5|C|4603
8G5Z|1|L5|G|4604
8G5Z|1|L5|A|4605
8G5Z|1|L5|G|4606
8G5Z|1|L5|A|4607
8G5Z|1|L5|G|4608

Current chains

Chain L5

28S rRNA

Nearby chains

Chain EF

Elongation factor 1-alpha 1

Chain LH

60S ribosomal protein L9

Chain Lm

eL40