HL_8G5Z_087
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CAGCCCGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 8G5Z|1|Pt|G|19, 8G5Z|1|Pt|G|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G5Z_087 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.0987
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
8G5Z|1|Pt|C|13
8G5Z|1|Pt|A|14
8G5Z|1|Pt|G|15
8G5Z|1|Pt|C|16
8G5Z|1|Pt|C|17
8G5Z|1|Pt|C|18
8G5Z|1|Pt|G|19
8G5Z|1|Pt|G|20
8G5Z|1|Pt|H2U|21
8G5Z|1|Pt|A|22
8G5Z|1|Pt|G|23
Current chains
- Chain Pt
- P-site tRNA fMet
Nearby chains
- Chain 5A
- eIF5A1
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
- Chain Lo
- Ribosomal protein L36a
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