HL_8G5Z_120

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

8G5Z|1|S2|U|1621, 8G5Z|1|S2|U|1622, 8G5Z|1|S2|A|1623

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G5Z|1|S2|G|1613
8G5Z|1|S2|A|1614
8G5Z|1|S2|U|1615
8G5Z|1|S2|U|1616
8G5Z|1|S2|G|1617
8G5Z|1|S2|C|1618
8G5Z|1|S2|A|1619
8G5Z|1|S2|A|1620
8G5Z|1|S2|U|1621
8G5Z|1|S2|U|1622
8G5Z|1|S2|A|1623
8G5Z|1|S2|U|1624
8G5Z|1|S2|PSU|1625
8G5Z|1|S2|C|1626

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

uS19

Chain SS

uS13

Chain ST

40S ribosomal protein S19

Chain Sd

40S ribosomal protein S29