HL_8G60_006

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_006 not in the Motif Atlas

Homologous match to HL_5TBW_003

Geometric discrepancy: 0.0844

The information below is about HL_5TBW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

8G60|1|L5|C|89
8G60|1|L5|G|90
8G60|1|L5|G|91
8G60|1|L5|C|92
8G60|1|L5|G|93
8G60|1|L5|A|94
8G60|1|L5|G|95

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

eL13

Chain LQ

eL18

Chain La

uL15

Chain Lo

eL42