3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CUCGCACGAAAG
Length
12 nucleotides
Bulged bases
8G60|1|L5|C|1365, 8G60|1|L5|A|1371
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G60_018 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.2066
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

8G60|1|L5|C|1363
8G60|1|L5|U|1364
8G60|1|L5|C|1365
8G60|1|L5|G|1366
8G60|1|L5|C|1367
8G60|1|L5|A|1368
8G60|1|L5|C|1369
8G60|1|L5|G|1370
8G60|1|L5|A|1371
8G60|1|L5|A|1372
8G60|1|L5|A|1373
8G60|1|L5|G|1374

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LC
uL4
Chain LL
eL13
Chain LN
eL15
Chain LY
uL24

Coloring options:


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