3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GGUAAGC
Length
7 nucleotides
Bulged bases
8G60|1|L5|G|1869
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G60_029 not in the Motif Atlas
Homologous match to HL_5TBW_025
Geometric discrepancy: 0.0638
The information below is about HL_5TBW_025
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8G60|1|L5|G|1864
8G60|1|L5|G|1865
8G60|1|L5|U|1866
8G60|1|L5|A|1867
8G60|1|L5|A|1868
8G60|1|L5|G|1869
8G60|1|L5|C|1870

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LI
uL16

Coloring options:


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