HL_8G60_035

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_035 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1163

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8G60|1|L5|A|2376
8G60|1|L5|C|2377
8G60|1|L5|G|2378
8G60|1|L5|A|2379
8G60|1|L5|G|2380
8G60|1|L5|A|2381
8G60|1|L5|A|2382
8G60|1|L5|C|2383
8G60|1|L5|U|2384

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

uL22

Chain LR

eL19

Chain Ld

eL31