HL_8G60_049

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

8G60|1|L5|U|2874

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_049 not in the Motif Atlas

Geometric match to HL_4V9F_044

Geometric discrepancy: 0.0865

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8G60|1|L5|C|2872
8G60|1|L5|U|2873
8G60|1|L5|U|2874
8G60|1|L5|C|2875
8G60|1|L5|OMG|2876
8G60|1|L5|G|2877

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

eL41

Chain Lp

eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA