HL_8G60_058

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCG

Length

62 nucleotides

Bulged bases

8G60|1|L5|A|3952, 8G60|1|L5|U|3957, 8G60|1|L5|U|3964, 8G60|1|L5|G|4035, 8G60|1|L5|G|4036, 8G60|1|L5|G|4039, 8G60|1|L5|C|4041, 8G60|1|L5|G|4042, 8G60|1|L5|U|4044, 8G60|1|L5|C|4052, 8G60|1|L5|A|4053, 8G60|1|L5|C|4054, 8G60|1|L5|U|4055

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G60|1|L5|C|3948
8G60|1|L5|A|3949
8G60|1|L5|U|3950
8G60|1|L5|G|3951
8G60|1|L5|A|3952
8G60|1|L5|G|3953
8G60|1|L5|A|3954
8G60|1|L5|G|3955
8G60|1|L5|G|3956
8G60|1|L5|U|3957
8G60|1|L5|G|3958
8G60|1|L5|U|3959
8G60|1|L5|A|3960
8G60|1|L5|G|3961
8G60|1|L5|A|3962
8G60|1|L5|A|3963
8G60|1|L5|U|3964
8G60|1|L5|A|3965
8G60|1|L5|A|3966
8G60|1|L5|G|3967
8G60|1|L5|U|3968
8G60|1|L5|G|3969
8G60|1|L5|G|3970
8G60|1|L5|G|3971
8G60|1|L5|A|3972
8G60|1|L5|G|3973
8G60|1|L5|G|3974
8G60|1|L5|C|3975
8G60|1|L5|C|3976
8G60|1|L5|C|3977
8G60|1|L5|G|4034
8G60|1|L5|G|4035
8G60|1|L5|G|4036
8G60|1|L5|C|4037
8G60|1|L5|C|4038
8G60|1|L5|G|4039
8G60|1|L5|C|4040
8G60|1|L5|C|4041
8G60|1|L5|G|4042
8G60|1|L5|G|4043
8G60|1|L5|U|4044
8G60|1|L5|G|4045
8G60|1|L5|A|4046
8G60|1|L5|A|4047
8G60|1|L5|A|4048
8G60|1|L5|U|4049
8G60|1|L5|A|4050
8G60|1|L5|C|4051
8G60|1|L5|C|4052
8G60|1|L5|A|4053
8G60|1|L5|C|4054
8G60|1|L5|U|4055
8G60|1|L5|A|4056
8G60|1|L5|C|4057
8G60|1|L5|U|4058
8G60|1|L5|C|4059
8G60|1|L5|U|4060
8G60|1|L5|G|4061
8G60|1|L5|A|4062
8G60|1|L5|U|4063
8G60|1|L5|C|4064
8G60|1|L5|G|4065

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

eL36

Chain Lz

uL1

Chain SB

eS1