HL_8G60_063

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_063 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.0953

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8G60|1|L5|C|4270
8G60|1|L5|A|4271
8G60|1|L5|G|4272
8G60|1|L5|A|4273
8G60|1|L5|A|4274
8G60|1|L5|G|4275
8G60|1|L5|G|4276
8G60|1|L5|G|4277

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

uL16

Chain LT

eL21

Chain Lo

eL42

Chain Pt

Transfer RNA; tRNA