HL_8G60_084

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAGCCCGG(H2U)AG

Length

11 nucleotides

Bulged bases

8G60|1|Pt|C|16, 8G60|1|Pt|G|19, 8G60|1|Pt|G|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_084 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.1358

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G60|1|Pt|C|13
8G60|1|Pt|A|14
8G60|1|Pt|G|15
8G60|1|Pt|C|16
8G60|1|Pt|C|17
8G60|1|Pt|C|18
8G60|1|Pt|G|19
8G60|1|Pt|G|20
8G60|1|Pt|H2U|21
8G60|1|Pt|A|22
8G60|1|Pt|G|23

Current chains

Chain Pt

P-site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

uL5

Chain Lo

eL42