HL_8G60_085

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

G(OMC)UCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_085 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.0661

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8G60|1|Pt|G|32
8G60|1|Pt|OMC|33
8G60|1|Pt|U|34
8G60|1|Pt|C|35
8G60|1|Pt|A|36
8G60|1|Pt|U|37
8G60|1|Pt|A|38
8G60|1|Pt|A|39
8G60|1|Pt|C|40

Current chains

Chain Pt

P-site tRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SP

uS19

Chain SQ

uS9

Chain mR

mRNA