HL_8G60_101

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UG(PSU)UCAAAG

Length

9 nucleotides

Bulged bases

8G60|1|S2|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_101 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.3645

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8G60|1|S2|U|820
8G60|1|S2|G|821
8G60|1|S2|PSU|822
8G60|1|S2|U|823
8G60|1|S2|C|824
8G60|1|S2|A|825
8G60|1|S2|A|826
8G60|1|S2|A|827
8G60|1|S2|G|828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

eS4

Chain SJ

uS4

Chain SY

eS24