HL_8G60_102

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

8G60|1|S2|G|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_102 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1451

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8G60|1|S2|C|833
8G60|1|S2|C|834
8G60|1|S2|C|835
8G60|1|S2|G|836
8G60|1|S2|A|837
8G60|1|S2|G|838
8G60|1|S2|C|839
8G60|1|S2|C|840
8G60|1|S2|G|841

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

eS4

Chain SJ

uS4

Chain SY

eS24