3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
AUUCCCAU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G60_107 not in the Motif Atlas
Geometric match to HL_4WF9_011
Geometric discrepancy: 0.2255
The information below is about HL_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.6
Basepair signature
cWW-F
Number of instances in this motif group
21

Unit IDs

8G60|1|S2|A|1113
8G60|1|S2|U|1114
8G60|1|S2|U|1115
8G60|1|S2|C|1116
8G60|1|S2|C|1117
8G60|1|S2|C|1118
8G60|1|S2|A|1119
8G60|1|S2|U|1120

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SB
eS1
Chain Sb
eS27

Coloring options:


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