HL_8G60_107

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_107 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2255

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8G60|1|S2|A|1113
8G60|1|S2|U|1114
8G60|1|S2|U|1115
8G60|1|S2|C|1116
8G60|1|S2|C|1117
8G60|1|S2|C|1118
8G60|1|S2|A|1119
8G60|1|S2|U|1120

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

eS1

Chain Sb

eS27