HL_8G6J_019

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(OMG)UCUUG(1MA)AAC(A2M)CG

Length

14 nucleotides

Bulged bases

8G6J|1|L5|C|1325

QA status

Modified nucleotides: OMG, 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_019 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.151

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8G6J|1|L5|C|1315
8G6J|1|L5|OMG|1316
8G6J|1|L5|U|1317
8G6J|1|L5|C|1318
8G6J|1|L5|U|1319
8G6J|1|L5|U|1320
8G6J|1|L5|G|1321
8G6J|1|L5|1MA|1322
8G6J|1|L5|A|1323
8G6J|1|L5|A|1324
8G6J|1|L5|C|1325
8G6J|1|L5|A2M|1326
8G6J|1|L5|C|1327
8G6J|1|L5|G|1328

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32