HL_8G6J_031

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8G6J|1|L5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_031 not in the Motif Atlas

Geometric match to HL_5TBW_025

Geometric discrepancy: 0.0824

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8G6J|1|L5|G|1864
8G6J|1|L5|G|1865
8G6J|1|L5|U|1866
8G6J|1|L5|A|1867
8G6J|1|L5|A|1868
8G6J|1|L5|G|1869
8G6J|1|L5|C|1870

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10