HL_8G6J_052

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGUCGGUCGCGGCCGGCGCCUAGC

Length

25 nucleotides

Bulged bases

8G6J|1|L5|G|2903, 8G6J|1|L5|C|2909, 8G6J|1|L5|G|2910, 8G6J|1|L5|C|3584, 8G6J|1|L5|G|3590, 8G6J|1|L5|C|3594

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G6J|1|L5|G|2901
8G6J|1|L5|G|2902
8G6J|1|L5|G|2903
8G6J|1|L5|U|2904
8G6J|1|L5|C|2905
8G6J|1|L5|G|2906
8G6J|1|L5|G|2907
8G6J|1|L5|U|2908
8G6J|1|L5|C|2909
8G6J|1|L5|G|2910
8G6J|1|L5|C|3584
8G6J|1|L5|G|3585
8G6J|1|L5|G|3586
8G6J|1|L5|C|3587
8G6J|1|L5|C|3588
8G6J|1|L5|G|3589
8G6J|1|L5|G|3590
8G6J|1|L5|C|3591
8G6J|1|L5|G|3592
8G6J|1|L5|C|3593
8G6J|1|L5|C|3594
8G6J|1|L5|U|3595
8G6J|1|L5|A|3596
8G6J|1|L5|G|3597
8G6J|1|L5|C|3598

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SL

40S ribosomal protein S11