HL_8G6J_063

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8G6J|1|L5|G|4195

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_063 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1312

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8G6J|1|L5|C|4193
8G6J|1|L5|U|4194
8G6J|1|L5|G|4195
8G6J|1|L5|OMG|4196
8G6J|1|L5|G|4197
8G6J|1|L5|G|4198
8G6J|1|L5|C|4199
8G6J|1|L5|G|4200
8G6J|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lb

60S ribosomal protein L29

Chain Pt

Transfer RNA; tRNA