HL_8G6J_072

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

U(OMU)(OMG)(PSU)UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_072 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.3411

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8G6J|1|L5|U|4497
8G6J|1|L5|OMU|4498
8G6J|1|L5|OMG|4499
8G6J|1|L5|PSU|4500
8G6J|1|L5|U|4501
8G6J|1|L5|C|4502
8G6J|1|L5|A|4503

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3