HL_8G6J_076

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8G6J|1|L5|G|4694, 8G6J|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_076 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1734

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8G6J|1|L5|C|4688
8G6J|1|L5|PSU|4689
8G6J|1|L5|G|4690
8G6J|1|L5|A|4691
8G6J|1|L5|A|4692
8G6J|1|L5|C|4693
8G6J|1|L5|G|4694
8G6J|1|L5|C|4695
8G6J|1|L5|C|4696
8G6J|1|L5|U|4697
8G6J|1|L5|C|4698
8G6J|1|L5|U|4699
8G6J|1|L5|A|4700
8G6J|1|L5|A|4701
8G6J|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

eL40