3D structure

PDB id
8G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CAGCUAGC(PSU)G
Length
10 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6J_083 not in the Motif Atlas
Geometric match to HL_4V9F_001
Geometric discrepancy: 0.2942
The information below is about HL_4V9F_001
Detailed Annotation
Pseudoknot with intercalation
Broad Annotation
No text annotation
Motif group
HL_17803.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

8G6J|1|L8|C|47
8G6J|1|L8|A|48
8G6J|1|L8|G|49
8G6J|1|L8|C|50
8G6J|1|L8|U|51
8G6J|1|L8|A|52
8G6J|1|L8|G|53
8G6J|1|L8|C|54
8G6J|1|L8|PSU|55
8G6J|1|L8|G|56

Current chains

Chain L8
5.8S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LX
60S ribosomal protein L23a
Chain Lh
60S ribosomal protein L35
Chain Lj
60S ribosomal protein L37
Chain Ll
60S ribosomal protein L39

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