HL_8G6J_095

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8G6J|1|S2|U|328

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_095 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.292

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8G6J|1|S2|C|322
8G6J|1|S2|C|323
8G6J|1|S2|C|324
8G6J|1|S2|C|325
8G6J|1|S2|C|326
8G6J|1|S2|G|327
8G6J|1|S2|U|328
8G6J|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6