HL_8G6J_105

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

8G6J|1|S2|C|840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_105 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3511

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8G6J|1|S2|C|833
8G6J|1|S2|C|834
8G6J|1|S2|C|835
8G6J|1|S2|G|836
8G6J|1|S2|A|837
8G6J|1|S2|G|838
8G6J|1|S2|C|839
8G6J|1|S2|C|840
8G6J|1|S2|G|841

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24