3D structure

PDB id
8G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6J_108 not in the Motif Atlas
Homologous match to HL_4V88_207
Geometric discrepancy: 0.0705
The information below is about HL_4V88_207
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8G6J|1|S2|C|994
8G6J|1|S2|G|995
8G6J|1|S2|A|996
8G6J|1|S2|A|997
8G6J|1|S2|A|998
8G6J|1|S2|G|999

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SN
40S ribosomal protein S13
Chain Sa
40S ribosomal protein S26

Coloring options:


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