HL_8G6W_032

3D structure

PDB id

8G6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

UCAGGGUAGA

Length

10 nucleotides

Bulged bases

8G6W|1|Y|G|18, 8G6W|1|Y|G|19, 8G6W|1|Y|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6W_032 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.5381

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

8G6W|1|Y|U|12
8G6W|1|Y|C|13
8G6W|1|Y|A|14
8G6W|1|Y|G|15
8G6W|1|Y|G|18
8G6W|1|Y|G|19
8G6W|1|Y|U|20
8G6W|1|Y|A|21
8G6W|1|Y|G|22
8G6W|1|Y|A|23

Current chains

Chain Y

A-site oABZ-tRNAPhe

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA