3D structure

PDB id
8G6W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
CGAAUAG
Length
7 nucleotides
Bulged bases
8G6W|1|a|U|615
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6W_055 not in the Motif Atlas
Geometric match to HL_4V9F_036
Geometric discrepancy: 0.25
The information below is about HL_4V9F_036
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

8G6W|1|a|C|611
8G6W|1|a|G|612
8G6W|1|a|A|613
8G6W|1|a|A|614
8G6W|1|a|U|615
8G6W|1|a|A|616
8G6W|1|a|G|617

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
50S ribosomal protein L4

Coloring options:


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