HL_8G6Y_008
3D structure
- PDB id
- 8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.09 Å
Loop
- Sequence
- UGAUAUGAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G6Y_008 not in the Motif Atlas
- Homologous match to HL_5J7L_135
- Geometric discrepancy: 0.1039
- The information below is about HL_5J7L_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80241.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8G6Y|1|a|U|87
8G6Y|1|a|G|88
8G6Y|1|a|A|89
8G6Y|1|a|U|90
8G6Y|1|a|A|91
8G6Y|1|a|U|92
8G6Y|1|a|G|93
8G6Y|1|a|A|94
8G6Y|1|a|A|95
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain s
- 50S ribosomal protein L23
- Chain t
- 50S ribosomal protein L24
- Chain x
- 50S ribosomal protein L29
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