HL_8G6Y_010

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8G6Y|1|a|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6Y_010 not in the Motif Atlas

Geometric match to HL_4LFB_031

Geometric discrepancy: 0.1257

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8G6Y|1|a|U|137
8G6Y|1|a|U|138
8G6Y|1|a|U|139
8G6Y|1|a|C|140
8G6Y|1|a|G|141
8G6Y|1|a|A|142

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23